Based on the anoxic/oxic (A/O) step feed process, a modified University of Cape Town (UCT) step feed process was developed by adding an anaerobic zone and adjusting sludge return pipeline. Performance evaluation of these two types of processes was investigated by optimizing operational parameters, such as the anaerobic/anoxic/oxic volumes, internal recycle ratios, and sludge retention times, for removal of chemical oxygen demanding (COD), nitrogen, and phosphorus. Results showed high removal efficiencies of COD of (85.0±1.7)%, ammonium of (99.7±0.2)%, total nitrogen (TN) of (85.5±1.7)%, phosphorus of (95.1±3.3)%, as well as excellent sludge settleability with average sludge volume index of (83.7±9.5) L·mg in the modified UCT process. Moreover, (61.5±6.0)% of influent COD was efficiently involved in denitrification or phosphorus release process. As much as 35.3% of TN was eliminated through simultaneous nitrification and denitrification process in aerobic zones. In addition, the presence of denitrifying phosphorus accumulating organisms (DNPAOs), accounting for approximately 39.2% of PAOs, was also greatly beneficial to the nitrogen and phosphorus removal. Consequently, the modified UCT step feed process was more attractive for the wastewater treatment plant, because it had extremely competitive advantages such as higher nutrient removal efficiencies, lower energy and dosages consumption, excellent settling sludge and operational assurance.