Microbial Electrosynthesis for Producing Medium Chain Fatty Acids

Abstract

Microbial electrosynthesis (MES) employs microbial catalysts and electrochemistry to enhance CO₂ bioconversion to organics with concurrent waste biorefining capability. The aim of this review is to comprehensively discuss the current state of the art and prospects of medium chain fatty acids (MCFAs) production in MES from CO₂ and waste organics. Fundamental mechanisms and development of MCFAs production via conventional fermentation are introduced as well. Studies on MCFAs production in MES are summarized, highlighting the strategy of multiple-electron donors (EDs). Challenges for MCFAs production in MES from CO₂ are presented, and the primary discussions included methanogenesis inhibition, adenosine triphosphate (ATP) limitations of acetogens, and production of limited EDs via solventogenesis. Possible applications of electrochemical approaches to promote the bioconversion of actual waste materials with MCFAs production are analyzed. Finally, future directions are explored, including multi-stage reactions, substrate supply, product extraction, and microbial pathways.

Content

《1. Introduction》

1. Introduction

Rapid urbanization and population growth have amplified problems of increased greenhouse gas emissions, significant generation of organic wastes, and energy crisis. Carbon dioxide (CO₂) is an important greenhouse gas, and there are significant economic and political incentives to develop technologies to capture and sequester CO₂ [1]. Global research and development (R&D) projects to improve CO₂ utilization have mainly focused on chemical production, mineralization, food processing, biological fixation, and energy storage [2]. Among these technologies, there is a growing interest in using CO₂ as a carbon source to produce high-valued chemicals. Many biosynthesis strategies cannot efficiently compete with chemosynthesis to produce chemicals due to lower productivity, yield, and titer [3]. However, biological routes provide higher specificity, lower energy costs under ambient conditions, and better avoid the poisoning effect of impurities [4]. Harnessing resources from microbial cell factories, CO₂ can be exploited as an alternative feedstock to sugar or biomass, and was described as the third generation biorefinery recently [4]. Higher energy efficiency of solar-electricity-products based on autotrophic electrosynthesis is expected from the direct bioconversion of CO₂ compared with the efficiency of solar-to-biomass-to-products [4]. In addition to CO₂2, organic waste can also be used as sustainable feedstock for biochemical production [5]. Overall, there is strong interest in the development of technologies for resource recovery that are less environmentally harmful options for organic waste management [6,7]. The exploitation of renewable energy can help to decrease global anthropic CO₂ emissions, leading to an increased amount of renewable energy as a fraction of total electricity produced globally [8]. In the context of Power-to-X conversion technologies, renewable energy can be stored in fuels with a high volumetric or gravimetric storage capacity that are also compatible with existing fuel infrastructure [9].

Microbial electrosynthesis (MES), in a narrow sense, is a microbial electrochemical technology using microbes as electrode catalysts for chemical production from CO₂, and in a broad sense, includes the microbial electrochemical valorization of organic waste [10–12]. The development of MES together with the appropriate biological and electronic components has attracted an enormous amount of attention in recent years.

The application of MES for chemical production from CO₂, can use electrotrophic microbes for the generation of hydrocarbons from the sequestration of CO₂ and the storage of renewable energy [13–15]. Over the past decade, efforts to develop MES for chemical production from CO₂ has mainly centered on boosting the production rate and broadening the spectrum of chemicals that can be synthesized using this methodology [16]. For instance, production rate can be stimulated with adaptive laboratory evolution (ALE) of microbes, improvement of electrode materials, and the design of novel reactors with greater efficiency [17,18]. In addition, product spectrum can be expanded with the development of novel engineered biocatalyst to produce high value fine chemicals [19,20], or with the design of integrated process to produce bulk chemicals [21–23].

MES for chemical production from organic waste valorization should provide high selectivity by precisely controlling bioconversions with an increased operating range of redox conditions compared with that of traditional oxidation reduction potential (ORP)-based control [24]. In addition, the insertion of a solid electrode to serve as the terminal electron acceptor (EA) or electron donor (ED) can overcome the thermodynamic barrier of the fermentation process [25]. Compared with direct H₂ gas injection, reduction driven by an electrode should decrease energy consumption by stirring to overcome the gas–liquid mass transfer limitation [26]. MES for the valorization of organic wastes can be accomplished using fermentative microbes that are capable of extracellular electron transfer (EET) and co-fermentation with electroactive microbes. For example, the electro-fermentation of Gram-positive bacteria Clostridium acetobutylicum has been conducted in mediator-less reactors, and a shift in products was obtained using flavin-based EET [27]. With the development of enabling technologies, fine chemicals can be produced in MES [28]. However, the use of multiplex genome editing approaches and the assembly of too many different modules may overburden the chassis, causing imbalanced metabolism and insufficient efficiency [3]. Synthetic microbial consortia provide an alternative through labor division between two or more engineered strains that grow together [29]. However, the performance of synthetic microbial consortia in MES has not yet been demonstrated. The use of mixed cultures may decrease the capital and operating costs compared to singleorganism cultures, or axenic systems, due to the use of unsterilized raw substrates [30]. It is thus attractive to create the mixed culture MES strategies for chemical production from practical organic waste valorization.

Medium chain fatty acids (MCFAs) are straight chain fatty acids with 6–12 carbon atoms (C6–C12) and one carboxylic group [31,32]. MCFAs have higher energy density than precursors such as short chain fatty acids (SCFAs, C2–C5), and can be used as antimicrobial agents, flavor additives, animal feed, and precursors of biofuels. Of these MCFAs, caproate (C6) has the lowest availability from traditional resources, but a high titer of C6 can be achieved by microbial production [33]. The market price of C1–C5 generally increases with carbon chain length (Fig. 1(a)), and C6 has an unrefined value of 1000 USD·t^–1 and a refined value of 3800 USD·t^–1 [8,17,34–36]. The global market value for carboxylates varies depending on the carbon chain (Fig. 1(b)), and it is estimated that by the end of 2023, the market value of MCFAs will reach ~8 × 10⁹ USD [33]. The hydrophobicity of carboxylates is generally increased with the increase of carbon chain length. For instance, the solubilities of undissociated caproate and valerate are 10.82 and 49.7 g·L^–1 , respectively, but other SCFAs are entirely miscible [37]. The stronger hydrophobicity of C6 leads to a nearly ten percent of energy consumption for extraction, compared with the energy required for C2 (Fig. 1(c)) [17].

《Fig. 1》

Fig. 1. (a) Market price of carboxylic acids. (b) Global market value of carboxylic acids projected to reach by 2026, and data are from different sources (https:// www.marketsandmarkets.com/, https://www.marketwatch.com/, https://dataintelo.com/, http://www.gosreports.com/, and https://www.acumenresearchandconsulting.com/). (c) The energy consumption for extraction of carboxylic acids, and data are from an excellent review paper (Ref. [17]). Each data point is obtained from different sources, and bar height is the mean of these data. Data of market price are from Refs. [8,17,34–36].

There have been several excellent reviews on MES, describing the mechanisms of EET [38], configurations of bioreactors [39,40], strategies of energy efficiency improvement [41], discussions of energy consumption [17], developments of photosensitized materials [42], and applications of three-dimensional cathodes [43]. However, few review papers have focused on the use of MES for specific products. For example, the microbiome for methane or acetate production in MES has been discussed [44,45], the huge potential to merge the MES with existing biorefinery technologies was summarized [9,46,47], and prospects for improved butanol production using MES were discussed [48]. Conventional fermentation for MCFAs production can be potentially enhanced via microbial electrochemical regulation [31,32], and the production of MCFAs in MES should be economically profitable, especially compared to products such as methane and acetate [49,50]. The aim of this review is to comprehensively discuss the state of art and prospects for the use of MES to produce MCFAs. First, the fundamentals and recent advances of MCFAs production in conventional fermentation are introduced, and then recent works on MCFAs production in MES that optimized structure or parameters are summarized. Next, challenges for MCFAs production from CO₂ in MES are analyzed. Practical organic wastes can contain multiple-EDs, but in MES the electrode is used as a solid ED to promote bioconversion, so the use of multiple-EDs present both opportunity and challenge in both conventional fermentation and MES. Finally, future developments and perspectives for improved production in MES are outlined. Overall, this review should provide a common knowledge base for microbial electrochemical MCFAs production and may help guide future interdisciplinary work for increased application of this technology.

《2. MCFAs production via conventional fermentation》

2. MCFAs production via conventional fermentation

In this section, recent advances in approaches to the production of sustainable MCFAs by conventional fermentation are introduced. Because practical organic wastes can contain multipleEDs, the effects of multiple-EDs on the bioconversion are discussed.

《2.1. Working principle and recent advances》

2.1. Working principle and recent advances

Significant progress has been obtained in the field of microbial MCFAs production, with effective demonstration of industrialization by the company ChainCraft^↑ . Microbes including Clostridium kluyveri (C. kluyveri), Clostridium sp. BS-1 (renamed Caproiciproducens galactitolivorans), Megasphaera elsdenii, and Megasphaera hexanoica are capable of MCFAs production, and the microbial chain elongation (CE) process based on the reverse β oxidation (RBO) pathway has been clarified [32,51,52]. Briefly, in the RBO pathway, acetyl coenzyme A (acetyl-CoA) generated from the oxidation of various EDs can interact in cyclic form with SCFAs that act as EAs, to extend the carbon chain length by two carbons for each cycle [32]. The effects of pH, yeast extract, and inorganic carbon on the model microbe C. kluyveri have been evaluated [53]. Microbial production of C8–C12 MCFAs with engineered microbes, for example, Escherichia coli (E. coli), is generally in the ‘‘milligram per liter” lower range, given that these chemicals are not endogenous to cells and it is difficult to control chain length [54]. In addition, MCFAs production in yeast Saccharomyces cerevisiae (S. cerevisiae) was recently achieved by multidimensional manipulation of fatty acid synthases (FASs) [55]. Even-numbered, odd-numbered, and branched MCFAs can be produced by feeding of even-numbered, odd-numbered, and iso-forms of SCFAs, respectively [33]. Practical organic wastes have been used as feedstocks for MCFAs production, including food waste [56,57], acid whey waste [37,58], grass [59], activated sludge alkaline fermentation liquor [60], anaerobic fermentation liquid from sewage sludge [61], and Chinese Baijiu-making wastewater [62]. Granular sludge has been formed for MCFAs production [63,64]. Various bioreactors have been tested for MCFAs production, including upflow anaerobic filter (UAF), upflow anaerobic sludge blanket (UASB), anaerobic sequencing batch reactor (ASBR), continuous stirred tank reactor (CSTR), leach-bed reactor (LBR), and expanded granular sludge bed (EGSB) [65]. The long-term performance of continuous reactor systems to produce MCFAs for more than one year has also been evaluated [58,65,66].

^↑ https://www.chaincraft.nl

《2.2. Multiple-EDs in conventional fermentation》

2.2. Multiple-EDs in conventional fermentation

EDs are required for microbial production of MCFAs, and EDs can be from ethanol, methanol, lactate, H₂, and CO [31,32]. The characteristics of different EDs contribute significantly to the cost, the microbial community, and the carbon flux for MCFAs production. Ethanol has been proposed as the most ideal ED for microbial MCFAs production, considering that ethanol can be produced from various sources including industrial and agricultural waste while using as ED a high MCFAs productivity can be obtained [67]. However, the supply of additional ethanol has a negative environmental impact and an increased cost [68]. If ethanol is used as a source of ED, external CO₂ is required for protein synthesis of the corresponding MCFAs-forming bacteria, for example, C. kluyveri [69]. Cheap and readily available methanol has been used as the ED to produce i-butyrate and n-butyrate [66]. When lactate is used as ED, CO₂ is released, and this can decrease the carbon efficiency [70]. H₂ can be used as a gaseous energy carrier, but this is restricted by its low solubility. CO can provide a lower redox potential than that of H₂, and MCFAs can be produced with CO as the sole ED and carbon source [71]. Clostridium ljungdahlii (C. ljungdahlii) can produce different products, by shifting from acetate feeding with H₂/CO₂ to more reduced ethanol feeding with CO/ CO₂ [72]. Also, CO can be used to directly upgrade SCFAs to generate MCFAs [73]. However, CO is inhibitory to various microbes to varying degrees, and is predicted to shape the microbial community due to its toxicity [74].

Substantial efforts have been made to evaluate the presence of multiple-EDs on microbial MCFAs production. There are two main lines of research: upgrading specific organic wastes that naturally contain multiple-EDs, or valuating the addition of external EDs to facilitate MCFAs production. Combining ethanol and lactate is expected to promote MCFAs production, as the CO₂ released from lactate compensates for the CO₂ requirement in ethanol-guided CE. Chinese Baijiu-making wastewater, which contains lactate, ethanol, and SCFAs, was used as substrate with an MCFAs selectivity (electron equivalents of MCFAs dividing by electrons from consumed substrates) of 80.34% ± 5.26% in serum bottles [62], and an MCFAs yield of 76.80% in long-term EGSB operation [65]. Concurrent use of methanol and ethanol in a CE reactor upgraded SCFAs into caproate and isobutyrate [75]. Addition of CO in ethanol fermentation increased the distribution of electrons to C3–C7 fatty acids and decreased the distribution to acetate and methane [76]. H₂ supply reduced the competing acrylate pathway of lactateguided CE and improved MCFAs production [77].

Multiple-EDs can also potentially result in decreased MCFAs production, depending on the microbial community, the substrate composition, and operation parameters. For example, the supplementation of ethanol in a bioreactor fed with food waste decreased overall MCFAs production, but supplementation with H₂ resulted in improved performance [57]. Similarly, ethanol supplementation in a bioreactor fed with acid whey and operated with pH as low as 5.5 decreased the generation of MCFAs [78]. The reduced production of MCFAs with the addition of ethanol can be explained by the fact that the ethanol-guided caproate producer, for example, C. kluyveri is not a key microbe in these bioreactors, and lactate, not ethanol, mainly acts as the ED. C. kluyveri for ethanol-guided CE grows best at pH from 6.5 to 7.6, while Ruminococcaceae bacterium CPB6 for lactate-guided CE grows optimally at initial pH from 5.5 to 6 [79]. A recent study found that a pH value below 6 can stimulate MCFAs production from lactate over alternative pathways [80]. When feeding with a mixed substrate (such as lactose, lactate, acetate, and ethanol), bioaugmentation with C. kluyveri resulted in lower caproate production compared with the control reactor that was inoculated with only heattreated anaerobic digester sludge. These results might be because C. kluyveri can repress the activity of microbes responsible for lactate utilization [81].

《3. MCFAs production in MES》

3. MCFAs production in MES

MCFAs production in MES should be more economically profitable than the production of methane or acetate as primary products. In addition, MCFAs production can provide new opportunities for practical MES application by integration with other existing biorefinery technologies. In this section, studies on MCFAs production in MES are discussed.

《3.1. CO2 as the sole carbon source》

3.1. CO₂ as the sole carbon source

In MES, acetate is generally the main product from CO₂ if methanogenesis is inhibited [17,38]. A few studies on MCFAs production in MES from CO₂ achieved a maximum C6 specificity that ranged from < 4% to 20%, with a lag phase up to 240 d (Table 1) [22,49,74,82–91]. The optimization of MES bioreactors and process parameters (e.g., pH and gas partial pressure) is critical for MCFAs generation using CO₂ as the sole carbon source. An MES bioreactor was constructed with forced-flow through of catholyte that allowed maintenance of a high current density (175 A·m^–2 ); with a lag phase of 150 days, the reactor finally reached a maximum caproate concentration of 1.5 g·L^–1 , which is lower than that of butyrate (3.2 g·L^–1 ) and acetate (8.6 g·L^–1 ) [82]. A novel dualbiocathode MES was constructed to separately control the pH of a conventional biocathode (6.9) and a middle biocathode (4.9), with production of caproate (0.27 g·L^–1 ), butyrate (1.49 g·L^–1 ), and acetate (about 4.1 g·L^–1 ) [22]. By operating the MES reactor at low pH and elevated H₂ partial pressure, a concentration of butyrate higher than that of acetate was obtained, with only a trace amount of caproate [84]. In these MES bioreactors, butyrate can be produced directly via the Wood–Ljungdahl pathway (WLP) coupled to acetyl-CoA reduction or via the RBO pathway-based CE process [92,93]. The detection of caproate in MES suggests the RBO pathway is active [84], but the relative contributions of these two pathways to butyrate production have not been determined. With the control of pH value to around 5 and after 462 days of operation, a maximum caproate concentration of 1.2 g·L^–1 was obtained in MES, which was still lower than that of butyrate (3.1 g·L^–1 ) and acetate (4.9 g·L^–1 ) [49]. By regulating the CO₂ feeding rate in MES, a maximum caproate concentration of 3.1 g·L^–1was obtained after 200 days, again, still lower than the maximum concentrations of butyrate (9.3 g·L^–1 ) and acetate (17.5 g·L^–1 ) [83]. Considering the challenges of using CO₂ as the sole carbon source for MCFAs production, the use of SCFAs as an alternative to CO₂ has been applied in MES, with some of these studies discussed in section 4.3. In addition, MCFAs production in MES can also be stimulated with additional ED.

《Table 1》

Table 1 Studies on MCFAs production in MES.

^a Electrons recovered in C6 compared with all identified liquid organic chemicals.

^bNot available.

《3.2. Multiple-EDs in MES》

3.2. Multiple-EDs in MES

The strategy of multiple-EDs has been applied in MES for increased production of MCFAs (Fig. 2(a)). The concurrent use of electrode and ethanol as EDs in MES was achieved (Fig. 2(b)). Caproate was produced as the main product with a remarkably high selectivity of 80.28% ± 0.52% [90]. The maximum caproate concentration was (7.66 ± 1.38) g·L^–1 , much higher than that of butyrate ((1.22 ± 0.73) g·L^–1 ) and acetate ((1.15 ± 0.77) g·L^–1 ). According to the carbon balance calculation, 23.43% ± 0.69% of carbon in these liquid organic chemicals could originate from CO₂. The concurrent use of an electrode and CO as EDs in MES for MCFAs is not easy to implement, although a mixture of products including acetate, butyrate, propionate, isobutyrate, and isovalerate has been produced [94]. However, a recent study observed that caproate was produced with a specificity of 15.41% ± 1.48% in MES (Fig. 2(c)), feeding with CO:CO₂ (50:50) [74]. In contrast, in MES fed with pure CO₂, caproate was not detected [74].

《Fig. 2》

Fig. 2. (a) Strategy using multiple-EDs in MES for MCFAs production. (b) Concurrent use of electrode and ethanol as EDs in MES, with higher selectivity of caproate than that using ethanol or electrode alone. Reproduced from Ref. [90] with permission of Elsevier Ltd., © 2020. (c) Concurrent use of electrode and CO as EDs in MES; maximum caproate specificity achieved with 50% CO. Reproduced from Ref. [74] with permission of American Chemical Society, © 2020. (d) The effect of an additional acclimated cathode on mixed culture CE process under different substrate concentrations. Reproduced from Ref. [91] with permission of Elsevier Ltd., © 2020. CF: carbon felt; Selectivity_S+E: selectivity based on the substrate and electrode.

The presence of multiple-EDs in MES might affect acetogenesis, solventogenesis, and the CE process [95]. The use of CO as the sole electron donor can sustain the autotrophic growth of acetogens via methyl branch after a water–gas shift reaction or directly via the carbonyl branch of WLP [96]. During growth on CO, the adenosine triphosphate (ATP) yields and growth rates are expected to be higher than those of H₂, as CO reduction only produces ferredoxin (Fd2) for ATP production, but bifurcation of electrons between reduced Fd2 and NADPH was observed when feeding with H₂/ CO₂ [97]. The effects of a poised electrode on acetogenesis or solventogenesis have not been addressed. For example, it is not clear whether a poised electrode can directly feed acetogens for ferredoxin reduction to improve ATP yield [98]. More research is needed, but studies have suggested that a poised electrode might affect the CE process to some extent. As a global transcriptional regulator, Rex plays a key role in C. kluyveri to regulate metabolism in response to the cellular NADH/NAD⁺ ratio [99], which is crucial for energy generation [100]. A poised electrode can drive the NADH pool to a more reduced state [3]. However, the caproate production of C. kluyveri in cathodic condition ((100.7 ± 8.2) mmol·L^–1 ) was not statistically significant different from that obtained with open circuit control ((81.7 ± 12.0) mmol·L^–1 ) [101]. Mixed culture electro-fermentation with a fresh cathode could increase the caproate specificity by about 28% from the bioconversion of acetate and ethanol, compared with the amount obtained by open circuit control [91]. However, the effect of an acclimated cathode on caproate production depended on the substrates (Fig. 2(d)) [91]. Microbial electrochemical regulation of MCFAs production from lactate should allow the recapture of released CO₂ from bioconversion, but this has not been shown experimentally.

《4. Challenges for MCFAs production in MES from CO2》

4. Challenges for MCFAs production in MES from CO₂

MCFAs production from complex organic waste via conventional fermentation is a spontaneous process [100], consisting of hydrolysis, primary fermentation, and CE (Fig. 3(a)). MCFAs production in MES with CO₂as the sole carbon source is challenging, requiring processes of acetogenesis, solventogenesis, and CE (Fig. 3(b)) [22,49]. In this section, the challenges for MCFAs production in MES are comprehensively discussed.

《Fig. 3》

Fig. 3. MCFAs production via (a) conventional fermentation from complex organic waste and in (b) MES from CO₂.

《4.1. Methanogenesis inhibition》

4.1. Methanogenesis inhibition

In open culture fermentation, methanogens can consume substrates or intermediates (i.e., acetate and H₂) of the CE process to decrease overall yield of MCFAs [32,102]. Methanogens can thermodynamically affect the CE process, by consuming H₂ and CO₂ [32,103], as methane formation ( = –130 kJ) is even thermodynamically more favorable than acetate formation ( = –55 kJ). Methanogens are anaerobic prokaryotes, including aceticlastic methanogens (e.g., Methanosaeta), facultative aceticlastic methanogens (e.g., Methanosarcina), and hydrogenotrophic methanogens (e.g., Methanobacterium, Methanoculleus, and Methanobrevibacter) [104]. The current cost of CH₄ production via power-to-H₂-to-CH₄ is estimated at ~1.2 EUR·kg^–1 CH₄ (assuming efficiency of H₂-to-CH₄ conversion of 90%), making this not an economic choice, given that the current wholesale price of natural gas is below 0.25 EUR·kg^–1 [105].

Methanogenesis inhibition includes different approaches to reduce methanogenesis by suppressing the activity of methanogens. Methanogens can be manipulated with the addition of chemical inhibitors [106], redox mediators [107], or conductive materials, such as magnetite [108] and powder activated carbon [109]. 2-bromoethanesulfonate, is a frequently-used inhibitor but its addition increases overall cost [73], the effect is short-lived due to microbial degradation [110,111], and its addition may suppress branched MCFAs production [106]. An alternative strategy is to modify the operation parameters, as methanogens can be inhibited with low pH, low temperature, decreased sludge retention time (SRT), or decreased CO₂ and H₂ partial pressures [81]. It should be noted that these approaches for methanogenesis inhibition could potentially apply to MES as well as traditional fermentation.

《4.2. ATP limitations of acetogen》

4.2. ATP limitations of acetogen

Acetogens are defined as having a reductive acetyl-CoA pathway for CO₂ assimilation, with acetate formation relatively irrelevant [112]. Acetogens can work independently of other microbes. The model acetogen Acetobacterium woodii (A. woodii) is capable of hydrogen generation from fermentation and hydrogen consumption for CO₂ reduction in one cell, making the fermentation process energetically possible and independent from syntrophic components [113]. Acetogen is also of ecological importance. The WLP serves as more of an electron sink than a complete respiratory chain, so it can be potentially combined with the fermentation of various substrates to achieve redox balance [112].

WLP is the most suitable pathway for microbial CO₂ fixation under anaerobic condition [114], based on ATP consumption [4]. However, acetogen generally can only produce chemicals whose biosynthesis is coupled to ATP generation [115], due to its ATP limitation [98], and any diversion of acetyl-CoA flux away from acetate can further increase the ATP cost [98]. For instance, the yield of acetate can be 23.6 mol per 100 mol H₂, but the theoretical upper limit for butanol is only 0.2 mol [115]. Also, each mole of acetate produced supports the generation of only 0.25 to 0.63 mol ATP, leading to low overall yields and slow growth rates [116]. Given the energy limitations of this process, acetogen metabolism is controlled by thermodynamics through metabolite levels rather than at the energetically expensive posttranslational level [117].

With ATP limitation, the use of acetogen to produce chemicals with longer carbon chain, for example, MCFAs, is challenging, and products in MES reactors are mostly dominated by acetate. It is thus urgent to solve the problem of ATP limitation of acetogen in order to increase the volumetric production rate by increasing the biomass densities and expand the spectrum of chemicals by regulating the carbon flux. Strategies to address the ATP limitation of acetogen in conventional fermentation include the use of additional EAs for energy conservation and improving the yields of acetogens through mixotrophy (Fig. 4) [116,118–120].

As EA, nitrate is more energy favorable than CO₂ [116]. For example, nitrate addition improved the growth rate, biomass density, and ATP/adenosine diphosphate (ADP) ratio of C. ljungdahlii (Fig. 4(a)) [116]. However, Moorella thermoacetica (M. thermoacetica) cannot respire on nitrate while reducing CO₂, and A. woodii is unable to metabolize nitrate [116]. Negative effects of nitrate addition for energy conservation include the consumption of electrons, accumulation of ammonium, and the increase of pH. Nitrate addition can also lead to differences in growth and production rates, probably due to stochastic inhibition events [121].

WLP is active during autotrophic as well as heterotrophic growth [96], and many acetogens are capable of sourcing electrons from various EDs, including sugars, C1 compounds such as formate and CO, primary fermentation products such as alcohols and SCFAs, or methylated nitrogen compounds such as glycine and betaine, in addition to H₂. Mixotrophy of acetogens allow the concurrent utilization of both organic and inorganic substrates (Fig. 4(b)), by the decoupling of ATP production from CO₂ fixation [122]. Mixotrophy of microbes other than acetogens, such as cyanobacteria and microalgae, has also been reported [123,124]. For example, mixotrophic growth of Chlorella sorokiniana on SCFAs resulted in increased biomass productivity [125]. However, among the known CO₂ fixation pathways, only WLP is capable of stoichiometric conversion of six carbon sugars into three moles of acetate [126]. Mixotrophy is a trait of tested acetogens, including A. Woodii, C. ljungdahlii, Clostridium autoethanogenum (C. autoethanogenum), Eubacterium limosum (E. limosum), and M. thermoacetica [118]. Mixotrophy of acetogens can increase energy conservation by providing an alternative energy source for chemical production from CO₂ utilization [127]. Mixotrophy of acetogens can also improve the product yields from the fermentation of organic matters, as the released CO₂ can be fixed through WLP. In microbial fermentation, the conversion of pyruvate decarboxylation to acetyl-CoA with the release of CO₂ can cause at least 33% loss of the sugarsubstrate carbon. The carbon efficiency can be further decreased during the production of more reduced chemicals [128], for example, with a theoretical yield of 51% for ethanol [118].

The types of organic substrates utilized can affect the mixotrophy of acetogens. For instance, fructose was found to be the only carbohydrate utilized for mixotrophy of 17 different acetogens [122]. Glucose is not expected to complete carbon fixation, given produced reducing equivalents approximately equal to the requirement of released CO₂ fixation, but some reducing equivalents will be consumed by biomass generation and maintenance [122]. Products with different degrees of reduction can affect the mixotrophy of acetogens. For more reduced products, for example, butanol, more reducing equivalents are directed towards product formation, so less CO₂ is fixed. H₂-enhanced mixotrophy is proposed to reduce overall CO₂ emissions while generating more reduced products from the fermentation of organic matters [118].

For mixotrophy of acetogens, the CO₂ produced during glycolysis and the CO₂ uptake via WLP should be balanced to improve the product yields from the fermentation of organic matters. In addition, ATP production during glycolysis should be appropriate to the consumption for CO₂ uptake, cell growth, and chemical production. However, a critical concern for mixotrophy of acetogens is carbon catabolic repression (CCR), which is accompanied by the downregulation of genes for WLP in response to the presence of energetically favorable organic substrates. The occurrence of CCR varies between species of acetogens and culture conditions [129], and many species can use C1 gases and carbohydrates simultaneously [126]. However, CCR was observed when cofeeding M. thermoacetica with glucose and CO₂ [119]. Optimizing the culture conditions by feeding sugars with kinetically limiting concentrations could shift carbon substrate preferences towards CO₂ (Fig. 4(c)) [119]. Similarly, a recent study observed the co-uptake of xylose and CO by C. autoethanogenum for acetate production (Fig. 4(d)), under xylose-limited conditions [120]. The integration of MCFAs production with mixotrophy of acetogens was highlighted in an early review paper [126]. This proposal is based on a fact that under anaerobic condition, the fermentation of organic substrates is expected to generate efficient ATP for WLP, and products from WLP can serve as substrates for the RBO pathway. The concept of electrode-enhanced mixotrophy is proposed here, which might improve overall performance, in terms of CO₂ fixation and MCFAs production, although this has not been demonstrated experimentally (Fig. 5). In microbial electrochemical reactors, a solid electrode is used as the ED for extracellular or potential intracellular H₂ production [130]. However, the carbon flux of WLP may be essentially different in conventional fermentation using H₂ or in MES with an electrode as EDs, in terms of production rate and product spectrum [131,132].

《Fig. 4》

Fig. 4. Strategies to overcome the ATP limitations of acetogen. (a) Nitrate as additional EA provides reducing equivalents for ATP generation in C. ljungdahlii [116] (OD₆₆₀: optical density at 660 nm; Y_C/A: cellular yield per acetate; P_V: volumetric productivity; the unit of growth rate and P_V is h^–1 and mmol C·h^–1 ·L^–1 , respectively). (b) Different modes of fermentation including heterotrophy, mixotrophy, and H₂-enhanced mixotrophy. Reproduced from Ref. [118], with permission. (c) Feeding sugars at kinetically limiting concentrations to conquer CCR [119]. (d) Co-uptake of xylose and CO for acetate production under xylose-limited conditions. Reproduced from Ref. [120], with permission.

《Fig. 5》

Fig. 5. Concept of electrode-enhanced mixotrophy for enhanced MCFAs production. SLP: substrate level phosphorylation. CO₂ released from SLP can be refixed by WLP. A proportion of CO₂ was used to supporting the growth of MCFAs-forming bacteria.

《4.3. Limited EDs produced via solventogenesis for CE》

4.3. Limited EDs produced via solventogenesis for CE

Solventogenesis is a microbial process for the fermentative production of solvents (e.g., alcohols) [133]. Solventogenesis capacity has been tested with stains belonging to the genus Clostridium, including Clostridium aceticum, C. ljungdahlii, C. carboxidivorans, C. ragsdalei, and C. autoethanogenum [134]. The acetaldehyde ferredoxin oxidoreductase (AOR)–aldehyde/alcohol dehydrogenase (AdhE)-based acetate reduction to ethanol may play a more critical role for ethanol synthesis in C. ljungdahlii, compared with that of AdhE-based acetyl-CoA conversion [135]. Some acetogenic strains can grow well with a wider pH range from 5.4 to 9.8 [136]. However, mildly acidic pH (< 5) is critical for solventogenesis, in addition to the accumulation of carboxylate [133]. For example, decreased pH value increases the diffusion of undissociated acetic acid into cells, leading to increased uncoupling of the proton motive force (PMF), while a shift of products from acetate toward ethanol for energy conservation can achieve ATP homeostasis with low uncoupling of the PMF [137]. Longer-chain alcohols can be produced from syngas with multiple reactions. For example, a co-culture study found initial production of ethanol and acetate by C. ljungdahlii, followed by production of longer-chain carboxylates by C. kluyveri, and then production of longer-chain alcohols via the reduction of corresponding carboxylates by C. ljungdahlii [138].

Microbial electrochemical solventogenesis generally produces limited alcohols [38,88], limiting the follow-up CE process for MCFAs production due to the lack of sufficient EDs [32]. Alcohols can be produced from CO₂ as the sole carbon source in MES. The use of a gas diffusion cathode can stimulate the solventogenesis process, although MCFAs were not produced [139]. Alcohols can also be produced by the reduction of SCFAs in MES, and optimized SCFAs loading and low-pH condition are essentially required to increase performance [140]. In a dual-chamber bioreactor and feeding with 6 g·L^–1 acetate, microbial electrochemical CE was achieved with maximum concentrations of 0.74 g·L^–1 for caproate, 0.26 g·L^–1 for butyrate, 0.04 g·L^–1 for caprylate, and 0.03 g·L^–1 for ethanol [86]. In another dual-chamber electrochemical bioreactor fed with acetate and CO₂, butyrate was produced without the detection of alcohols, with production of propionate and caproate in only trace amounts [87]. A single chamber MES reactor was constructed for the reduction of both acetate and butyrate, and ethanol, methanol, and propanol were identified as the main products with a trace amount of butanol, with a reduction efficiency of about 50% for acetate, and 18%–40% for butyrate [141]. Thus, the maximum total concentration of alcohols was only (1.15 ± 0.07) grams of chemical oxygen demand per liter (g-COD·L^–1 ) for substrate loading of 8.0 g-COD·L^–1 [141]. Microbial electrochemical solventogenesis and thus the overall production of MCFAs can be affected by the presence of mediators [142], the types of SCFAs, and the process of microbial adaption [89]. Collectively, limited EDs are produced by solventogenesis in MES, with little or no production of MCFAs. The in-situ production and consumption of alcohols might lead to low accumulation. To achieve a higher caproate specificity via the CE process, a high substrate ratio of ethanol to acetate (e.g., 4:1) is required [143].

《5. Electrochemical technologies enhanced MCFAs production》

5. Electrochemical technologies enhanced MCFAs production

Most recent studies of MES for MCFAs production have used chemically defined artificial media. The bioconversion of practical organic matter and syngas for MCFAs production is a complex process, and electrochemical technologies can be potentially applied to enhance the production of MCFAs at different stages.

Tuning of the carbon-to-energy-to-cofactor ratios is crucial for the biorefinery of practical organic wastes using the reactor microbiome. The use of a single substrate naturally imposes stoichiometric constraints on available carbons, energy, and redox cofactors [119]. It is difficult to simultaneously satisfy all demands at the appropriate ratios using a single substrate, such as using glucose as the sole carbon source, which can lead to biosynthetic imbalance and suboptimal product yield [144]. Glucose can produce NADPH more directly; however, this is an energy deficient substrate. Acetate can support acetyl-CoA and ATP generation, but not NADPH generation [119]. The tuning of carbon-to-energy-tocofactor ratios can help to alleviate protein burdens, since different substrates have different entry points to metabolic processes [119]. For example, limited quantities of glucose can be supplemented in xylose-based cultivation of S. cerevisiae, allowing for improved efficiency [145]. As EAs and EDs for MCFAs production, carboxylates and alcohols can be produced from organic wastes after pretreatment and primary fermentation process. However, MCFAs production from practical organic wastes might be restricted by an unbalanced ED/EA ratio. For instance, EAs are not sufficient after fermentation of sugarcane juice [146], while EDs are required with the fermentation of sludge [147]. The energy supply can be regulated with a poised electrode in MES reactors, and the available carbons and redox cofactors can be adjusted using co-substrates addition. For instance, co-fermentation and co-digestion have been proposed to increase H₂ or CH₄ recovery with increased nutrient balance, diluted inhibitors, and increased solid reduction [148,149].

Syngas generated from the thermal gasification, industrial emission, and electrolytic CO₂ reduction could be used to produce carboxylates and alcohols by syngas fermentation. The bioconversion of syngas could increase the CO₂ utilization potential, which is still relatively small compared to global CO₂ emissions [2]. The bioconversion of syngas from thermal gasification of non-alimentary feedstock can use biomass in its entirety, including lignin (10%– 35% of lignocellulosic biomass), which is highly resistant to direct microbial degradation [96]. There are limited microbes that can be used to produce MCFAs and derivatives from syngas. For example, C. carboxidivorans and E. limosum can generate caproate [150], and C. carboxidivorans can form hexanol from syngas [151]. Bioconversion of CO could release CO₂, so additional EDs will be required for re-assimilation of these CO₂ [152]. For example, H₂ supply reduced carbon loss by releasing CO₂ and increasing the carbon flux towards ethanol for gas-fermentation with C. autoethanogenum [153]. However, hydrogenases and H₂ uptake may be inhibited by the presence of excess CO [117]. The co-fermentation of syngas with glucose also increased the conversion efficiencies [154]. A very recent study has suggested that a poised electrode as additional ED could increase the acetate production and biomass growth compared with traditional syngas fermentation, while the detail mechanism have not been fully clarified [155].

Electrochemical technologies can be potentially used to promote the bioconversion of wastes for MCFAs production at different process stages (Fig. 6). For example, electrochemical technologies can be used for ammonia and sulphur recovery from organic waste valorization with pretreatment, in situ, and side stream approaches [9,156]. The recovery of ammonia and sulphur as nutrients can increase economic benefits and help to increase MCFAs production by decreasing microbial toxicity and reducing unwanted flux of carbon or electrons [32]. Recovery of highconcentration charged carboxylates can be achieved with electrolytic extraction, while stripping of alcohols can be potentially obtained by electrocatalytic hydrogen evolution. In addition, the use of MES as a standalone technology can potentially use CO₂ to produce both acetate and ethanol with a tunable ratio. Microbial electrochemical solventogenesis can be used to adjust the ED/EA proportion before use as feedstock for CE process. For in situ enhancement, the microbial activity of primary fermentation, syngas fermentation, and CE process might be stimulated with electrochemical technologies by electrical stimulation, parameter regulation, and microbial synergistic interaction [157]. For instance, zerovalent iron, activated carbon, and biochar can enhance MCFAs production and selectivity by declining the ORP, decreasing the lag phase, altering the microbial community structure, and acting as an electron shuttle to improve electron transfer efficiency [158,159].

《Fig. 6》

Fig. 6. Potential applications of electrochemical technologies to enhance bioconversion of wastes with MCFAs production.

《6. Research gaps and perspectives》

6. Research gaps and perspectives

Collectively, producing more valuable MCFAs will further promote the development of MES technologies with high economic return. Combining traditional bioconversion with MES could potentially improve the overall performance. In this section, the existing research gaps and future perspectives are identified.

《6.1. Multi-stage reactions》

6.1. Multi-stage reactions

MCFAs are produced via multi-stage reactions. The design of these multi-stage reactions depends on the types of wastes utilized, which may contain or can produce different EAs and EDs at different ratios. The involved microbes and optimized conditions for these reactions can differ, and functional division could be accomplished with the attachment of biofilm, or with use of a second reactor. Also, the characteristics of the catholyte in MES, containing EAs and/or EDs, can further affect the CE process for MCFAs production. For example, mediators secreted by electrotrophic microbes could be used by MCFAs-forming microbes for redirected carbon and electron flux.

The production rate and consumption rate of intermediates that are used as EAs and/or EDs for MCFAs production should be compatible. Overall, the concentrations and types of intermediate products should be regulated for multi-stage reactions. For instance, the accumulation of acetate at a high concentration (> 10 g·L^–1 ) can theoretically promote the efficiency of MES as a standalone technology for application in the food industry [17]. However, a high concentration of acetate might cause microbial toxicity for some multi-stage reactions [154]. Many microbes are incapable of direct electron transfer (DET), and bioconversion based on DET is constrained by very low current density [160]. The use of H₂ as a mediator raises safety issues due to its low solubility. To increase the potential of energy storage [161], and to balance charges between reduction and electromigration [162], formate might be a better intermediate product than acetate [163]. However, formate only carries two electrons per carbon, so the re-release of the initially reduced CO₂ for use as an intermediate for bioconversion would be restrictive [14].

《6.2. Substrates supply and products extraction》

6.2. Substrates supply and products extraction

The supply of substrates and the extraction of products are both important considerations in the design of MES reactors. The sparging of gaseous substrate with low solubility can increase mass transfer, but this will potentially reduce the accumulation of alcohols with non-trivial vapor pressure to thus restrict MCFAs production. Extraction of products is important for MCFAs production, as the inhibitory action is generally increased with the increase of carbon chain. Also, the toxicity of MCFAs can be enhanced by low pH and the presence of ethanol [55]. It is important to increase the robustness under toxic environment with novel reactors [147]. In addition, extraction and separation units may require a more compact structure, while maintaining the capability to selectively extract and perform phase separation of MCFAs [164,165].

《6.3. Electrochemical effects on microbes and pathways》

6.3. Electrochemical effects on microbes and pathways

The involved microbes and pathways for MCFAs production in MES reactors can be regulated with the exchange of mass and electrons. The integration of electrochemistry into bioreactors could affect mass transfer and thus the overall bioconversion process. Gradients of substrates and products can form from the bulk liquid towards the surface of the electrode. The creation of an electrical field can affect the mass transfer of charged ions, for example, SCFAs and MCFAs in anionic form. The insertion of a solid electrode with forced EET could reduce the growth yields of some specific microbes, including C. autoethanogenum [166] and C. pasteurianum [167]. Also, the insertion of an electrode could affect microbial gene expression, as the expression profile of cathodic biofilm can be remarkably different from that with H₂ as ED [168]. There can be significant variation in the reactor microbiome, as microbial communities attached on electrodes can be distinct from those in the mixed liquor [156]. For instance, biofilm growth on the electrode allows the retention of slow-growing microbes. In addition, the insertion of a conductive electrode with a large surface area can stimulate electron exchange between microbes, that is, interspecies electron transfer (IET), to create mutualistic or nonmutualistic interactions [169]. It is necessary to determine changes in metabolic pathways under dynamic and complex conditions in an MES reactor for MCFAs production. Approaches for rational microbiome engineering have been proposed to manipulate microbial ecosystems, by integrating basic scientific discovery with engineering [170]. Metagenomic analysis is helpful to determine the key genes and their regulation, and this approach should be performed together with other investigative strategies such as microscopy and 13C-labeling analyses [168].

《7. Conclusions》

7. Conclusions

Substantial efforts have been made to produce MCFAs via conventional fermentation or via microbial electrochemical regulation of carbon flux in MES. However, MCFAs production from CO₂ in MES is limited by methanogenesis inhibition, ATP limitations of acetogens, and limited production of EDs. Opportunity and challenge are presented both in conventional fermentation and MES with the application of multiple-EDs. Electrochemical approaches can be developed to promote the bioconversion of waste for MCFAs production at different process stages. Further studies are required on the design of multi-stage reactions, substrate supply, product extraction, and electrochemical effects on microbes and pathways.

《Acknowledgments》

Acknowledgments

This work was supported by the National Natural Science Foundation of China (51908131), Special Fund of State Key Joint Laboratory of Environment Simulation and Pollution Control (19K05ESPCT), the Chinese Academy of Sciences (CAS) Key Laboratory of Environmental and Applied Microbiology & Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences (KLCAS-2019-1), and the Fujian Provincial Natural Science Foundation of China (2020J01563).

《Compliance with ethics guidelines》

Compliance with ethics guidelines

Na Chu, Wen Hao, Qinglian Wu, Qinjun Liang, Yong Jiang, Peng Liang, Zhiyong Jason Ren, and Raymond Jianxiong Zeng declare that they have no conflict of interest or financial conflicts to disclose.

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