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Culturomics and metagenomics: In understanding of environmental resistome
Monika Nowrotek, Łukasz Jałowiecki, Monika Harnisz, Grażyna Anna Płaza
Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 3, doi: 10.1007/s11783-019-1121-8
State of the art of culturomics and metagenomics to study resistome The combination of culturomics and metagenomics
Keywords: Culturomics Metagenomics Antibiotic resistance Resistome
Frontiers of Agricultural Science and Engineering 2023, Volume 10, Issue 3, Pages 403-423 doi: 10.15302/J-FASE-2022471
● Methane production from fresh straw was 7.50% higher than dry straw.
Keywords: fresh corn straw high solid anaerobic digestion metagenomics microbial communities thermophilic
Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 3, doi: 10.1007/s11783-021-1469-4
• Distribution of ARGs in decentralized sewage facilities were investigated.
Keywords: Decentralized sewage treatment facilities Antibiotic resistance genes Virus Metagenomics Network
Core Metabolic Features and Hot Origin of Bathyarchaeota Article
Xiaoyuan Feng, Yinzhao Wang, Rahul Zubin, Fengping Wang
Engineering 2019, Volume 5, Issue 3, Pages 498-504 doi: 10.1016/j.eng.2019.01.011
The archaeal phylum Bathyarchaeota comprises highly diversified subgroups and is considered to be one of the most abundant microorganisms on earth. The metabolic features and evolution of this phylum still remain largely unknown. In this article, a comparative metabolic analysis of 15 newly reconstructed and 36 published metagenomic assembled genomes (MAGs) spanning 10 subgroups was performed, revealing the core metabolic features of Bathyarchaeota—namely, protein, lipid, and benzoate degradation; glycolysis; and the Wood–Ljungdahl (WL) pathway, indicating an acetyl-CoA-centralized metabolism within this phylum. Furthermore, a partial tricarboxylic acid (TCA) cycle, acetogenesis, and sulfur-related metabolic pathways were found in specific subgroups, suggesting versatile metabolic capabilities and ecological functions of different subgroups. Intriguingly, most of the MAGs from the Bathy-21 and -22 subgroups, which are placed at the phylogenetic root of all bathyarchaeotal lineages and likely represent the ancient Bathyarchaeota types, were found in hydrothermal environments and encoded reverse gyrase, suggesting a hyperthermophilic feature. This work reveals the core metabolic features of Bathyarchaeota, and indicates a hot origin of this archaeal phylum.
Keywords: Bathyarchaeota Metagenomics Comparative genomics Hyperthermophilic adaptation
Binbin Sheng, Depeng Wang, Xianrong Liu, Guangxing Yang, Wu Zeng, Yiqing Yang, Fangang Meng
Frontiers of Environmental Science & Engineering 2020, Volume 14, Issue 6, doi: 10.1007/s11783-020-1272-7
Keywords: Landfill leachate Process upgrade Partial nitrification-denitrification Bacterial community Metagenomics
Alterations in the Gut Microbiome in Liver Recipients with Post-transplant Diabetes Mellitus Article
Qi Ling, Yuqiu Han, Yue Ma, Xiaosen Wang, Zheng Zhu, Jingyu Wang, Jiaying Cao, Lin Xiaohan, Jun Wang, Baohong Wang
Engineering 2023, Volume 31, Issue 12, Pages 98-111 doi: 10.1016/j.eng.2023.09.006
Keywords: Post-transplant diabetes mellitus Tacrolimus Metagenomics Metabolomics
Title Author Date Type Operation
Culturomics and metagenomics: In understanding of environmental resistome
Monika Nowrotek, Łukasz Jałowiecki, Monika Harnisz, Grażyna Anna Płaza
Journal Article
METAGENOMICS COMBINED WITH HIGH-THROUGHPUT SEQUENCING REVEALS THE METHANOGENIC POTENTIAL OF FRESH CORN
Journal Article
Distribution of antibiotic resistance genes and their association with bacteria and viruses in decentralized sewage treatment facilities
Journal Article
Core Metabolic Features and Hot Origin of Bathyarchaeota
Xiaoyuan Feng, Yinzhao Wang, Rahul Zubin, Fengping Wang
Journal Article
Taxonomic and functional variations in the microbial community during the upgrade process of a full-scale landfill leachate treatment plant – from conventional to partial nitrification-denitrification
Binbin Sheng, Depeng Wang, Xianrong Liu, Guangxing Yang, Wu Zeng, Yiqing Yang, Fangang Meng
Journal Article