Transforming Peroxisomes into Organelle Factories for Monoterpene Production in Yeast Ogataea polymorpha

Linfeng Xie , Min Ye , Haiyan Zhang , Xiaoxin Zhai , Fan Bai , Jiaoqi Gao , Yongjin J. Zhou

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Engineering ›› DOI: 10.1016/j.eng.2025.07.030
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Transforming Peroxisomes into Organelle Factories for Monoterpene Production in Yeast Ogataea polymorpha

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Abstract

Microbial production of natural products presents a promising alternative to traditional plant extraction. Recent metabolic engineering has employed subcellular compartmentalization to address the limitations of cytoplasmic engineering, while peroxisomes are emerging as ideal orthogonal compartments for bioproduction. Ogataea polymorpha (O. polymorpha), as an industrial yeast used for protein expression, is also regarded as model organism for peroxisomal study due to its abundant peroxisomes. Here, we engineered peroxisomes into organelle factories for sustainable production of monoterpenes in O. polymorpha. With enhancing the supply precursor geranyl pyrophosphate (GPP), peroxisomes overproduced various GPP-derived monoterpenes, including geraniol (1030 mg∙L–1), β-myrcene (47 mg∙L–1), and (+)-borneol (120 mg∙L–1). Our work suggested O. polymorpha is a superior host for peroxisomal compartmentalization strategy to produce high-valued chemicals.

Keywords

Monoterpenes / Biomanufacturing / Peroxisome engineering / Ogataea polymorpha

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Linfeng Xie, Min Ye, Haiyan Zhang, Xiaoxin Zhai, Fan Bai, Jiaoqi Gao, Yongjin J. Zhou. Transforming Peroxisomes into Organelle Factories for Monoterpene Production in Yeast Ogataea polymorpha. Engineering DOI:10.1016/j.eng.2025.07.030

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References

[1]

O SE’Connor, Maresh JJ.Chemistry and biology of monoterpene indole alkaloid biosynthesis.Nat Prod Rep 2006; 23(4):532-547.

[2]

Zhu K, Kong J, Zhao B, Rong L, Liu S, Lu Z, et al.Metabolic engineering of microbes for monoterpenoid production.Biotechnol Adv 2021; 53:107837.

[3]

Jiang H, Wang X.Biosynthesis of monoterpenoid and sesquiterpenoid as natural flavors and fragrances.Biotechnol Adv 2023; 65:108151.

[4]

Duss Séaux, Wajn WT, Liu Y, Ignea C, Kampranis SC.Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids.Proc Natl Acad Sci USA 2020; 117(50):31789-31799.

[5]

Wang X, Chen J, Zhang J, Zhou Y, Zhang Y, Wang F, et al.Engineering Escherichia coli for production of geraniol by systematic synthetic biology approaches and laboratory-evolved fusion tags.Metab Eng 2021; 66:60-67.

[6]

Agrawal A, Yang Z, Blenner M.Engineering Yarrowia lipolytica for the biosynthesis of geraniol.Metab Eng Commun 2023; 17:e00228.

[7]

Chen C, Liu J, Yao G, Bao S, Wan X, Wang F, et al.A novel, genetically encoded whole-cell biosensor for directed evolution of myrcene synthase in Escherichia coli.Biosens Bioelectron 2023; 228:115176.

[8]

Ye C, Li M, Gao J, Zuo Y, Xiao F, Jiang X, et al.Metabolic engineering of Pichia pastoris for overproduction of cis-trans nepetalactol.Metab Eng 2024; 84:83-94.

[9]

Ding YK, Ning Y, Xin D, Fu YJ.Dual cytoplasmic-peroxisomal compartmentalization engineering and multiple metabolic engineering strategies for high yield non-psychoactive cannabinoid in Saccharomyces cerevisiae.Biotechnol J 2024; 19(2):e2300590.

[10]

Hammer SK, Avalos JL.Harnessing yeast organelles for metabolic engineering.Nat Chem Biol 2017; 13(8):823-832.

[11]

Hou R, Shan M, Liu X, Yao M, Yang K, Wang Y, et al.Proteomic analysis reveals that the co-ordination of cytosolic and mitochondrial pathways is beneficial for sabinene biosynthesis in engineered Saccharomyces cerevisiae.Biotechnol J 2024; 19(4):e2300710.

[12]

Song S, Ye C, Jin Y, Dai H, Hu J, Lian J, et al.Peroxisome-based metabolic engineering for biomanufacturing and agriculture.Trends Biotechnol 2024; 42(9):1161-1176.

[13]

Xie L, Yu W, Gao J, Wang H, Zhou YJ.Ogataea polymorpha as a next-generation chassis for industrial biotechnology.Trends Biotechnol 2024; 42(11):1363-1378.

[14]

Gellissen G, Kunze G, Gaillardin C, Cregg J, Berardi E, Veenhuis M, et al.New yeast expression platforms based on methylotrophic Hansenula polymorpha and Pichia pastoris and on dimorphic Arxula adeninivorans and Yarrowia lipolytica—a comparison.FEMS Yeast Res 2005; 5(11):1079-1096.

[15]

Zhai X, Gao J, Li Y, Grininger M, Zhou YJ.Peroxisomal metabolic coupling improves fatty alcohol production from sole methanol in yeast.Proc Natl Acad Sci USA 2023; 120(12):e2220816120.

[16]

Ye M, Gao J, Zhou Y.Global metabolic rewiring of the nonconventional yeast Ogataea polymorpha for biosynthesis of the sesquiterpenoid β-elemene.Metab Eng 2023; 76:225-231.

[17]

Manfr JHCão-Netto, Gomes AMV, Parachin NS.Advances in using Hansenula polymorpha as chassis for recombinant protein production.Front Bioeng Biotechnol 2019; 7:94.

[18]

Yu W, Gao J, Zhai X, Zhou YJ.Screening neutral sites for metabolic engineering of methylotrophic yeast Ogataea polymorpha.Synth Syst Biotechnol 2021; 6(2):63-68.

[19]

Gao J, Gao N, Zhai X, Zhou YJ.Recombination machinery engineering for precise genome editing in methylotrophic yeast Ogataea polymorpha.iScience 2021; 24(3):102168.

[20]

Zhou YJ, Gao W, Rong Q, Jin G, Chu H, Liu W, et al.Modular pathway engineering of diterpenoid synthases and the mevalonic acid pathway for miltiradiene production.J Am Chem Soc 2012; 134(6):3234-3241.

[21]

Yan C, Yu W, Zhai X, Yao L, Guo X, Gao J, et al.Characterizing and engineering promoters for metabolic engineering of Ogataea polymorpha.Synth Syst Biotechnol 2022; 7(1):498-505.

[22]

Zhai X, Ji L, Gao J, Zhou YJ.Characterizing methanol metabolism-related promoters for metabolic engineering of Ogataea polymorpha.Appl Microbiol Biotechnol 2021; 105(23):8761-8769.

[23]

Zhou YJ, Buijs NA, Zhu Z, Gómez DO, Boonsombuti A, Siewers V, et al.Harnessing yeast peroxisomes for biosynthesis of fatty-acid-derived biofuels and chemicals with relieved side-pathway competition.J Am Chem Soc 2016; 138(47):15368-15377.

[24]

Krikken AM, Wu H, de RBoer, Devos DP, Levine TP, van IJder Klei.Peroxisome retention involves inp1-dependent peroxisome–plasma membrane contact sites in yeast.J Cell Biol 2020; 219(10):e201906023.

[25]

Ignea C, Raadam MH, Motawia MS, Makris AM, Vickers CE, Kampranis SC.Orthogonal monoterpenoid biosynthesis in yeast constructed on an isomeric substrate.Nat Commun 2019; 10(1):3799.

[26]

Jiang GZ, Yao MD, Wang Y, Zhou L, Song TQ, Liu H, et al.Manipulation of ges and ERG20 for geraniol overproduction in Saccharomyces cerevisiae.Metab Eng 2017; 41:57-66.

[27]

Paramasivan K, Mutturi S.Progress in terpene synthesis strategies through engineering of Saccharomyces cerevisiae.Crit Rev Biotechnol 2017; 37(8):974-989.

[28]

Polakowski T, Stahl U, Lang C.Overexpression of a cytosolic hydroxymethylglutaryl-CoA reductase leads to squalene accumulation in yeast.Appl Microbiol Biotechnol 1998; 49:66-71.

[29]

Ignea C, Pontini M, Maffei ME, Makris AM, Kampranis SC.Engineering monoterpene production in yeast using a synthetic dominant negative geranyl diphosphate synthase.ACS Synth Biol 2014; 3(5):298-306.

[30]

Brennan TCR, Turner CD, Krömer JO, Nielsen LK.Alleviating monoterpene toxicity using a two‐phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae.Biotechnol Bioeng 2012; 109(10):2513-2522.

[31]

Yee DA, De ABNicola, Billingsley JM, Creso JG, Subrahmanyam V, Tang Y.Engineered mitochondrial production of monoterpenes in Saccharomyces cerevisiae.Metab Eng 2019; 55:76-84.

[32]

Cao X, Yang S, Cao C, Zhou YJ.Harnessing sub-organelle metabolism for biosynthesis of isoprenoids in yeast.Synth Syst Biotechnol 2020; 5(3):179-186.

[33]

Ribeaucourt D, Höfler GT, Yemloul M, Bissaro B, Lambert F, Berrin JG, et al.Tunable production of (R)- or (S)-citronellal from geraniol via a bienzymatic cascade using a copper radical alcohol oxidase and old yellow enzyme.ACS Catal 2022; 12(2):1111-1116.

[34]

Steyer D, Erny C, Claudel P, Riveill G, Karst F, Legras JL.Genetic analysis of geraniol metabolism during fermentation.Food Microbiol 2013; 33(2):228-234.

[35]

Brown S, Clastre M, Courdavault V, O SE’Connor.De novo production of the plant-derived alkaloid strictosidine in yeast.Proc Natl Acad Sci USA 2015; 112(11):3205-3210.

[36]

Billingsley JM, DeNicola AB, Barber JS, Tang MC, Horecka J, Chu A, et al.Engineering the biocatalytic selectivity of iridoid production in Saccharomyces cerevisiae.Metab Eng 2017; 44:117-125.

[37]

Luckie BA, Kashyap M, Pearson AN, Chen Y, Liu Y, Valencia LE, et al.Development of Corynebacterium glutamicum as a monoterpene production platform.Metab Eng 2024; 81:110-122.

[38]

Bohlmann J, Meyer-Gauen G, Croteau G.Plant terpenoid synthases: molecular biology and phylogenetic analysis.Proc Natl Acad Sci USA 1998; 95(8):4126-4133.

[39]

Nielsen J, Keasling JD.Engineering cellular metabolism.Cell 2016; 164(6):1185-1197.

[40]

Gerke J, Frauendorf H, Schneider D, Wintergoller M, Hofmeister T, Poehlein A, et al.Production of the fragrance geraniol in peroxisomes of a product-tolerant baker’s yeast.Front Bioeng Biotechnol 2020; 8:582052.

[41]

Liu GS, Li T, Zhou W, Jiang M, Tao XY, Liu M, et al.The yeast peroxisome: a dynamic storage depot and subcellular factory for squalene overproduction.Metab Eng 2020; 57:151-161.

[42]

Zhou P, Zhou X, Yuan D, Fang X, Pang X, Yuan K, et al.Combining protein and organelle engineering for linalool overproduction in Saccharomyces cerevisiae.J Agric Food Chem 2023; 71(26):10133-10143.

[43]

Baker JJ, Shi J, Wang S, Mujica EM, Bianco S, Capponi S, et al.Ml-enhanced peroxisome capacity enables compartmentalization of multienzyme pathway. Nat Chem Biol (2024)

[44]

Cao C, Cao X, Yu W, Chen Y, Lin X, Zhu B, et al.Global metabolic rewiring of yeast enables overproduction of sesquiterpene (+)-valencene.J Agric Food Chem 2022; 70(23):7180-7187.

[45]

Cao C, Zhang H, Cao X, Kong S, Zhu B, Lin X, et al.Construction and optimization of nonclassical isoprenoid biosynthetic pathways in yeast peroxisomes for (+)-valencene production.J Agric Food Chem 2023; 71(29):11124-11130.

[46]

Kim EM, Eom JH, Um Y, Kim Y, Woo HM.Microbial synthesis of myrcene by metabolically engineered Escherichia coli.J Agric Food Chem 2015; 63(18):4606-4612.

[47]

Ma R, Su P, Ma Q, Guo J, Chen S, Jin B, et al.Identification of (–)-bornyl diphosphate synthase from Blumea balsamifera and its application for (–)-borneol biosynthesis in saccharomyces cerevisiae.Synth Syst Biotechnol 2022; 7(1):490-497.

[48]

Whittington DA, Wise ML, Urbansky M, Coates RM, Croteau RB, Christianson DW.Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclase.Proc Natl Acad Sci USA 2002; 99(24):15375-15380.

[49]

Lei D, Qiu Z, Wu J, Qiao B, Qiao J, Zhao GR.Combining metabolic and monoterpene synthase engineering for de novo production of monoterpene alcohols in Escherichia coli.ACS Synth Biol 2021; 10(6):1531-1544.

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