Nitrogen (N) is an essential nutrient for food production. The rapid increase in population requires high inputs of N to meet the growing food demand. If not managed well, the substantial loss of N from the food system has multiple impacts on grain yield, air and water pollution, and the economic benefits of agricultural. Multi-objective (food security, environmental sustainability and economic sustainability) synergistic consideration of N management in the food system is still lacking. This study employed strategies for optimizing N management in the food system, using Quzhou County as a typical example on the North China Plain. Firstly, a food chain approach was adopted to understand drivers and reasons behind N losses from the food system. Secondly, a top-down approach was used to define multi-objective N management, taking into consideration food security, environmental sustainability and economic sustainability. Multi-objective N management aims to reduce N losses to the environment and increase N use efficiencies, while simultaneously increasing yields and economic benefits. Thirdly, 3R (reduce-retain-recycle) N management strategies were identified for specific crops and animals through a bottom-up approach and then analyzed the potential of these strategies to achieve the multi-objectives. Finally, there is a discussion of how to engage different stakeholders to promote the technologies implementation. This study provides new insights into the synergistic achievement of multi-objective N management in the food system and the development of environmentally-friendly agriculture.