hsa-miR-197在子宫肌瘤中的表达及生物信息学特征分析

徐青()、付子毅、吴小莉、皇甫玉爽、凌静

中国工程科学 ›› 2014, Vol. 16 ›› Issue (5) : 99-104.

PDF(1933 KB)
PDF(1933 KB)
中国工程科学 ›› 2014, Vol. 16 ›› Issue (5) : 99-104.

hsa-miR-197在子宫肌瘤中的表达及生物信息学特征分析

  • 徐青()、付子毅、吴小莉、皇甫玉爽、凌静

作者信息 +

The expression mode of hsa-miR-197 in uterine leiomyomas tissue and related bioinformatics analysis

  • Xu Qing、Fu Ziyi、Wu Xiaoli、Huangfu Yushuang、Ling Jing

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摘要

应用实时定量聚合酶链式反应(PCR)技术检测子宫肌瘤组织中的hsa-miR-197 表达水平,并与配对正常子宫肌细胞对比。通过miRbase、UCSC、NCBI等在线数据库获取并分析hsa-miR-197 序列保守性及其基因组特征。选择miRanda、MirTarget2 及TargetScan 三个在线数据库预测hsa-miR-197 的靶基因并取交集以便后续分析。通过基因本体(GO)功能注释、GO富集分析和信号转导通路富集分析初步阐明,hsamiR-197 靶基因参与调控的细胞功能与信号通路。hsa-miR-197 的功能较广泛,参与肿瘤发生的多种生物学过程,提示hsa-miR-197 可能与子宫肌瘤的发病机制密切相关。

Abstract

We performed Real-time PCR to detect the hsa-miR-197 expression levels in uterine leiomyomas tissues and paired normal myometrium separately;online databases including miRbase,UCSC,NCBI are employed to analysis the sequence conservation and genetic characteristics of hsa- miR- 197;miRNA databases such as miRanda,MirTarget2 and TargetScan are chosen to predict hsa- miR- 197 target genes;meanwhile,the intersection genes of these miRNA databases are chosen,and GO and Pathway analysis of these genes are carried out to explore the potential role of hsa-miR-197 playing in regulating the uterine leiomyomas occurrence and development. hsa-miR-197 functions in broad ground and participates in uterine leiomyomas multiple biology progress,which indicates that hsa- miR- 197 could regulate uterine leiomyomas occurrence and development.

关键词

子宫肌瘤 / hsa-miR-197 / 生物信息学 / 靶基因

Keywords

uterine leiomyomas / hsa-miR-197 / bioinformatics analysis / target genes

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导出引用
徐青,付子毅,吴小莉,皇甫玉爽,凌静. hsa-miR-197在子宫肌瘤中的表达及生物信息学特征分析. 中国工程科学. 2014, 16(5): 99-104

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基金
国家自然科学基金青年科学基金项目(81202042);南京市卫生局科技发展项目(QRX11212)
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