The chang of regional positioning will affect the pattern of the development of transportation. From the perspective of the new regional orientation of the Qinba Mountain Area, many problems exist in the process of transport development. This paper analyses the main challenges of the transport development in the process of establishing the national central ecological functional demonstration area and the national park. Subsequently, based on the double requirements of economic and social development in the future and the ecological environmental protection of this area, this paper proposes a general strategy, developing priorities and policy recommendations to progress the construction of the green transport system in the Qinba Mountain Area.