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INTERCROPPING TEA PLANTATIONS WITH SOYBEAN AND RAPESEED ENHANCES NITROGEN FIXATION THROUGH SHIFTS IN SOIL

《农业科学与工程前沿（英文）》 2022年 第9卷 第3期   页码 344-355 doi: 10.15302/J-FASE-2022451

摘要：

● Intercropping change soil bacterial communities in tea plantations.

关键词： intercropping     rapeseed     soil microbe     soybean     tea garden    

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Isolation of microbe for asymmetric reduction of prochiral aromatic ketone and its reaction characters

YANG Zhonghua, WANG Yu, WANG Guanghui, ZENG Rong, YAO Shanjing

《化学科学与工程前沿（英文）》 2007年 第1卷 第4期   页码 416-420 doi: 10.1007/s11705-007-0076-7

摘要： The favorable microbes for the asymmetric reduction of prochiral aromatic ketones was isolated from soil using acetophenone as the sole carbon source, when the asymmetric reduction of acetophenone (ACP) to chiral ?-phenethyl alcohol (PEA) was chosen as the model reaction. Two microbe strains with excellent catalytic activity were obtained. They were and identified by bacteria identification. The product of the asymmetric reduction of ACP catalyzed by was mainly R-PEA and that by was mainly S-PEA. The yield and enantiomeric excesses (e.e.) could respectively reach 75% and 90% for , and 80% and 70% for , much higher than those catalyzed by baker s yeast.

关键词： excellent catalytic     prochiral aromatic     enantiomeric     -phenethyl     catalytic activity    

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USING NUTRITIONAL STRATEGIES TO MITIGATE RUMINAL METHANE EMISSIONS FROM RUMINANTS

《农业科学与工程前沿（英文）》 2023年 第10卷 第3期   页码 390-402 doi: 10.15302/J-FASE-2023504

摘要：

● Microbial fermentation in the rumen is a main source of methane emissions.

关键词： nutritional strategy     mitigation     microbe     methane     ruminant    

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Mitigation strategies for soil acidification based on optimal nitrogen management REVIEW

《农业科学与工程前沿（英文）》 2024年 第11卷 第2期   页码 229-242 doi: 10.15302/J-FASE-2024562

摘要：

Soil acidification is a serious constraint to food production worldwide. This review explores its primary causes, with a focus on the role of nitrogen fertilizer, and suggests mitigation strategies based on optimal N management. Natural acidification is determined by the leaching of weak acid mainly caused by climate and soil conditions, whereas the use of ammonium-based fertilizers, nitrate leaching and removal of base cations (BCs) by crop harvesting mostly accounts for anthropogenic acidification. In addition, low soil acid buffering capacity, mainly determined by soil parent materials and soil organic matter content, also accelerates acidification. This study proposes targeted mitigation strategies for different stages of soil acidification, which include monitoring soil carbonate content and pH of soils with pH > 6.5 (e.g., calcareous soil), use of alkaline amendments for strongly acidic soils (pH < 5.5) with aluminum toxicity risk to pH between 5.5 and 6.5, and decreasing acidification rates and supplementing BCs to maintain this optimal pH range, especially for soils with low acid buffering capacity. Effective mitigation involves optimizing the rate and form of N fertilizers used, regulating N transformation processes, and establishing an integrated soil–crop management system that balances acid production and soil buffering capacity.

关键词： Soil acidification     nutrient management     nitrogen     soil buffering capacity    

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Assessment of glass fiber-reinforced polyester pipe powder in soil improvement

《结构与土木工程前沿（英文）》 2021年 第15卷 第3期   页码 742-753 doi: 10.1007/s11709-021-0732-x

摘要： This study investigates the use of glass fiber-reinforced polyester (GRP) pipe powder (PP) for improving the bearing capacity of sandy soils. After a series of direct share tests, the optimum PP addition for improving the bearing capacity of soils was found to be 12%. Then, using the optimum PP addition, the bearing capacity of the soil was estimated through a series of loading tests on a shallow foundation model placed in a test box. The bearing capacity of sandy soil was improved by up to 30.7%. The ratio of the depth of the PP-reinforced soil to the diameter of the foundation model (H/D) of 1.25 could sufficiently strengthen sandy soil when the optimum PP ratio was used. Microstructural analyses showed that the increase in the bearing capacity can be attributed to the chopped fibers in the PP and their multiaxial distribution in the soil. Besides improving the engineering properties of soils, using PP as an additive in soils would reduce the accumulation of the industrial waste, thus providing a twofold benefit.

关键词： shallow foundation     sandy soil     bearing capacity     soil improvement     pipe powder    

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SOIL CARBON CHECK: A TOOL FOR MONITORING AND GUIDING SOIL CARBON SEQUESTRATION IN FARMER FIELDS

《农业科学与工程前沿（英文）》 2023年 第10卷 第2期   页码 248-261 doi: 10.15302/J-FASE-2023499

摘要：

● Establishment of a rapid tool for monitoring soil carbon sequestration in farmer fields.

关键词： 4 per 1000 initiative     carbon sequestration     climate action     farmer fields     SDG13     soil organic carbon     soil testing    

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Electromagnetic induction mapping at varied soil moisture reveals field-scale soil textural patterns

Hiruy ABDU, David A. ROBINSON, Janis BOETTINGER, Scott B. JONES

《农业科学与工程前沿（英文）》 2017年 第4卷 第2期   页码 135-145 doi: 10.15302/J-FASE-2017143

摘要： Knowledge of the spatial distribution of soil textural properties is important for determining soil moisture storage and soil hydraulic transport properties. Capturing field heterogeneity without exhaustive sampling and costly sample analysis is difficult. Our objective was to employ electromagnetic induction (EMI) mapping in low apparent electrical conductivity (EC ) soils at varying soil water contents to capture time invariant properties such as soil texture. Georeferenced EC measurements were taken using a ground conductivity meter on six different days where volumetric water content ( ) varied from 0.11 to 0.23. The 50 m × 50 m field included a subsurface gravelly patch in an otherwise homogeneous silt-loam alluvial soil. Ordinary block kriging predicted EC at unsampled areas to produce 1-m resolution maps. Temporal stability analysis was used to divide the field into three distinct EC regions. Subsequent ground-truthing confirmed the lowest conductivity region correlated with coarse textured soil parent materials associated with a former high-energy alluvial depositional area. Combining maps using temporal stability analysis gives the clearest image of the textural difference. These maps could be informative for modeling, experimental design, sensor placement and targeted zone management strategies in soil science, ecology, hydrology, and agricultural applications.

关键词： soil electrical conductivity     soil texture mapping     temporal stability analysis    

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PathogenTrack and Yeskit: tools for identifying intracellular pathogens from single-cell RNA-sequencing datasets as illustrated by application to COVID-19

《医学前沿（英文）》 2022年 第16卷 第2期   页码 251-262 doi: 10.1007/s11684-021-0915-9

摘要： Pathogenic microbes can induce cellular dysfunction, immune response, and cause infectious disease and other diseases including cancers. However, the cellular distributions of pathogens and their impact on host cells remain rarely explored due to the limited methods. Taking advantage of single-cell RNA-sequencing (scRNA-seq) analysis, we can assess the transcriptomic features at the single-cell level. Still, the tools used to interpret pathogens (such as viruses, bacteria, and fungi) at the single-cell level remain to be explored. Here, we introduced PathogenTrack, a python-based computational pipeline that uses unmapped scRNA-seq data to identify intracellular pathogens at the single-cell level. In addition, we established an R package named Yeskit to import, integrate, analyze, and interpret pathogen abundance and transcriptomic features in host cells. Robustness of these tools has been tested on various real and simulated scRNA-seq datasets. PathogenTrack is competitive to the state-of-the-art tools such as Viral-Track, and the first tools for identifying bacteria at the single-cell level. Using the raw data of bronchoalveolar lavage fluid samples (BALF) from COVID-19 patients in the SRA database, we found the SARS-CoV-2 virus exists in multiple cell types including epithelial cells and macrophages. SARS-CoV-2-positive neutrophils showed increased expression of genes related to type I interferon pathway and antigen presenting module. Additionally, we observed the Haemophilus parahaemolyticus in some macrophage and epithelial cells, indicating a co-infection of the bacterium in some severe cases of COVID-19. The PathogenTrack pipeline and the Yeskit package are publicly available at GitHub.

关键词： scRNA-seq     intracellular pathogen     microbe     COVID-19     SARS-CoV-2    

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Soil-water interaction in unsaturated expansive soil slopes

ZHAN Liangtong

《结构与土木工程前沿（英文）》 2007年 第1卷 第2期   页码 198-204 doi: 10.1007/s11709-007-0023-1

摘要： The intensive soil-water interaction in unsaturated expansive soil is one of the major reasons for slope failures. In this paper, the soil-water interaction is investigated with the full-scale field inspection of rainwater infiltration and comprehensive experiments, including wetting-induced softening tests, swelling, and shrinkage tests. It is demonstrated that the soil-water interaction induced by seasonal wetting-drying cycles is very complex, and it involves coupled effects among the changes in water content, suction, stress, deformation and shear strength. In addition, the abundant cracks in the expansive soil play an important role in the soil-water interaction. The cracks disintegrate the soil mass, and more importantly, provide easy pathways for rainfall infiltration. Infiltration of rainwater not only results in wetting-induced softening of the shallow unsaturated soil layers, but also leads to the increase of horizontal stress. The increase of horizontal stress may lead to a local passive failure. The seasonal wetting-drying cycles tend to result in a down-slope creeping of the shallow soil layer, which leads to progressive slope failure.

关键词： strength     intensive soil-water     comprehensive     Infiltration     wetting-induced softening    

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Paving the way toward soil safety and health: current status, challenges, and potential solutions

《环境科学与工程前沿（英文）》 2024年 第18卷 第6期 doi: 10.1007/s11783-024-1834-1

摘要：

● The safety and health of soil face global threats from widespread contamination.

关键词： Soil safety and health     Source emission reduction     Process monitoring and simulation     Green remediation technology     Soil health management    

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The greater roles of indigenous microorganisms in removing nitrobenzene from sediment compared with the exogenous

Xiangqun Chi, Yingying Zhang, Daosheng Wang, Feihua Wang, Wei Liang

《环境科学与工程前沿（英文）》 2018年 第12卷 第1期 doi: 10.1007/s11783-018-1016-0

摘要： The feasibility of using -JS45 system in removing nitrobenzene from sediments was conducted. However, it was observed that nitrobenzene degraded rapidly and was removed completely within 20 days in native sediments, raising the possibility that indigenous microorganisms may play important roles in nitrobenzene degradation. Consequently, this study aimed to verify this possibility and investigate the potential nitrobenzene degraders among indigenous microorganisms in sediments. The abundance of inoculated strain JS45 and indigenous bacteria in sediments was quantified using real-time polymerase chain reaction. Furthermore, community structure of the indigenous bacteria was analyzed through high throughput sequencing based on Illumina MiSeq platform. The results showed that indigenous bacteria in native sediments were abundant, approximately 10 CFU/g dry weight, which is about six orders of magnitude higher than that in fertile soils. In addition, the levels of indigenous ( , , , and ) and ( , , , , and ) increased significantly during nitrobenzene removal. Their quantities sharply decreased after nitrobenzene was removed completely, except for and . Based on the results, it can be concluded that indigenous microorganisms including and can have great potential for removing nitrobenzene from sediments. Although . - JS45 system was set up in an attempt to eliminate nitrobenzene from sediments, and the system did not meet the expectation. The findings still provide valuable information on enhancing nitrobenzene removal by optimizing the sediment conditions for better growth of indigenous and .

关键词： Community structure     Indigenous microorganisms     Nitrobenzene     Plant-microbe associated remediation     Sediment    

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Adsorption behavior of antibiotic in soil environment: a critical review

Shiliang WANG,Hui WANG

《环境科学与工程前沿（英文）》 2015年 第9卷 第4期   页码 565-574 doi: 10.1007/s11783-015-0801-2

摘要： Antibiotics are used widely in human and veterinary medicine, and are ubiquitous in environment matrices worldwide. Due to their consumption, excretion, and persistence, antibiotics are disseminated mostly via direct and indirect emissions such as excrements, sewage irrigation, and sludge compost and enter the soil and impact negatively the natural ecosystem of soil. Most antibiotics are amphiphilic or amphoteric and ionize. A non-polar core combined with polar functional moieties makes up numerous antibiotic molecules. Because of various molecule structures, physicochemical properties vary widely among antibiotic compounds. Sorption is an important process for the environment behaviors and fate of antibiotics in soil environment. The adsorption process has decisive role for the environmental behaviors and the ultimate fates of antibiotics in soil. Multiply physicochemical properties of antibiotics induce the large variations of their adsorption behaviors. In addition, factors of soil environment such as the pH, ionic strength, metal ions, and organic matter content also strongly impact the adsorption processes of antibiotics. Review about adsorption of antibiotics on soil can provide a fresh insight into understanding the antibiotic-soil interactions. Therefore, literatures about the adsorption mechanisms of antibiotics in soil environment and the effects of environment factors on adsorption behaviors of antibiotics in soil are reviewed and discussed systematically in this review.

关键词： adsorption     antibiotics     environment factors     soil    

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A review of soil nematodes as biological indicators for the assessment of soil health

Qiaofang LU, Tongtong LIU, Nanqi WANG, Zhechao DOU, Kunguang WANG, Yuanmei ZUO

《农业科学与工程前沿（英文）》 2020年 第7卷 第3期   页码 275-281 doi: 10.15302/J-FASE-2020327

摘要：

Healthy soils are essential for sustainable agricultural development and soil health requires careful assessment with increasing societal concern over environmentally friendly agricultural development. Soil health is the capacity of soil to function within ecological boundaries to sustain productivity, maintain environmental quality, and promote plant and animal health. Physical, chemical and biological indicators are used to evaluate soil health; the biological indicators include microbes, protozoa and metazoa. Nematodes are the most abundant metazoa and they vary in their sensitivity to pollutants and environmental disturbance. Soil nematode communities are useful biological indicators of soil health, with community characteristics such as abundance, diversity, community structure and metabolic footprint all closely correlated with the soil environment. The community size, complexity and structure reflect the condition of the soil. Both free-living and plant-parasitic nematodes are effective ecological indicators, contributing to nutrient cycling and having important roles as primary, secondary and tertiary consumers in food webs. Tillage inversion, cropping patterns and nutrient management may have strong effects on soil nematodes, with changes in soil nematode communities reflecting soil disturbance. Some free-living nematodes serve as biological models to test soil condition in the laboratory and because of these advantages soil nematodes are increasingly being used as biological indicators of soil health.

关键词： biological indicators     community characteristics     soil health     soil nematodes    

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A simplified method for the determination of vertically loaded pile-soil interface parameters in layeredsoil based on FLAC

Jiu-jiang WU,Yan LI,Qian-gong CHENG,Hua WEN,Xin LIANG

《结构与土木工程前沿（英文）》 2016年 第10卷 第1期   页码 103-111 doi: 10.1007/s11709-015-0328-4

摘要： The numerical analysis of pile-soil interaction commonly requires a lot of trial works to determine the interface parameters and the accuracy cannot be ensured normally. Considering this, this paper first conducts a sensitivity analysis to figure out the influence of interface parameters on the bearing behavior of a single pile in sand. Then, a simplified method for the determination of pile-soil interface parameters in layered soil is proposed based on the parameter studies. Finally, a filed loading test is used for the validation of the simplified method, and the calculated results agree well with the monitoring data. In general, the simplified method proposed in this paper works with higher accuracy and consumes less time compared with the traditional trial works, especially on the determinations of interfacial cohesive and interfacial friction angle.

关键词： determination of interface parameters     pile-soil interaction     FLAC3D     sensitivity analysis     layered soil    

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Spatial prediction of soil contamination based on machine learning: a review

《环境科学与工程前沿（英文）》 2023年 第17卷 第8期 doi: 10.1007/s11783-023-1693-1

摘要：

● A review of machine learning (ML) for spatial prediction of soil contamination.

关键词： Soil contamination     Machine learning     Prediction     Spatial distribution    

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标题 作者 时间 类型 操作

INTERCROPPING TEA PLANTATIONS WITH SOYBEAN AND RAPESEED ENHANCES NITROGEN FIXATION THROUGH SHIFTS IN SOIL

期刊论文

Isolation of microbe for asymmetric reduction of prochiral aromatic ketone and its reaction characters

YANG Zhonghua, WANG Yu, WANG Guanghui, ZENG Rong, YAO Shanjing

期刊论文

USING NUTRITIONAL STRATEGIES TO MITIGATE RUMINAL METHANE EMISSIONS FROM RUMINANTS

期刊论文

Mitigation strategies for soil acidification based on optimal nitrogen management

期刊论文

Assessment of glass fiber-reinforced polyester pipe powder in soil improvement

期刊论文

SOIL CARBON CHECK: A TOOL FOR MONITORING AND GUIDING SOIL CARBON SEQUESTRATION IN FARMER FIELDS

期刊论文

Electromagnetic induction mapping at varied soil moisture reveals field-scale soil textural patterns

Hiruy ABDU, David A. ROBINSON, Janis BOETTINGER, Scott B. JONES

期刊论文

PathogenTrack and Yeskit: tools for identifying intracellular pathogens from single-cell RNA-sequencing datasets as illustrated by application to COVID-19

期刊论文

Soil-water interaction in unsaturated expansive soil slopes

ZHAN Liangtong

期刊论文

Paving the way toward soil safety and health: current status, challenges, and potential solutions

期刊论文

The greater roles of indigenous microorganisms in removing nitrobenzene from sediment compared with the exogenous

Xiangqun Chi, Yingying Zhang, Daosheng Wang, Feihua Wang, Wei Liang

期刊论文

Adsorption behavior of antibiotic in soil environment: a critical review

Shiliang WANG,Hui WANG

期刊论文

A review of soil nematodes as biological indicators for the assessment of soil health

Qiaofang LU, Tongtong LIU, Nanqi WANG, Zhechao DOU, Kunguang WANG, Yuanmei ZUO

期刊论文

A simplified method for the determination of vertically loaded pile-soil interface parameters in layeredsoil based on FLAC

Jiu-jiang WU,Yan LI,Qian-gong CHENG,Hua WEN,Xin LIANG

期刊论文

Spatial prediction of soil contamination based on machine learning: a review

期刊论文